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Biological age tests: what epigenetic clocks measure and how far to trust them

The clocks predict mortality well across populations. On replicate samples, six prominent ones disagreed with themselves by up to nine years — which is most of what you need to know before tracking your own.

Theo Lindqvist9 min read
SIGNAL AND REPLICATE NOISEreplicate Areplicate Bsame sample, one truth

Biological age tests have become the front door to longevity medicine: send a blood or saliva sample, receive a number, feel either vindicated or alarmed. The underlying science is real and the papers behind it are serious. The gap that matters is between what those papers established — that these measures predict mortality and disease across populations — and what the product implies, which is that the number is precise enough to track your own progress from one test to the next. On that second claim, the literature is unusually blunt.

What the clocks actually measure

DNA methylation is a chemical mark on the genome that changes with age in a patterned way. In 2013, Steve Horvath built a multi-tissue age predictor from 8,000 samples spanning 82 datasets and 51 healthy tissue and cell types, resting on 353 CpG sites. It read close to zero in embryonic and induced pluripotent stem cells, correlated with cell passage number, and showed significant age acceleration across all 20 cancer types examined — averaging 36 years.[1] That paper is the reason the field exists.

The first-generation clocks were trained to predict chronological age, which caps how useful they can be: a perfect predictor of the number on your birth certificate tells you nothing you did not already know. The second generation changed the training target. PhenoAge was built on composite clinical measures of phenotypic age, and outperformed earlier measures for all-cause mortality, cancers, healthspan, physical functioning and Alzheimer’s disease.[2] GrimAge went further still, assembling DNA methylation surrogates for seven plasma proteins plus a methylation-based estimate of smoking pack-years; it stands out among epigenetic clocks for predicting time-to-death, time-to-coronary-heart-disease and time-to-cancer.[3]

DunedinPACE is a different object again, and the distinction is worth holding onto. Rather than estimating how old you are, it estimates how fast you are aging — modeled from within-individual decline in 19 indicators of organ-system integrity tracked across four time points over two decades in the Dunedin 1972–73 birth cohort, then distilled into a single blood test. It was associated with morbidity, disability and mortality, with effect sizes similar to GrimAge.[4]

What the major epigenetic aging measures were trained on and what they predict
MeasureTrained to predictWhat it is good at
Horvath clock (2013)Chronological age across tissuesProving the concept; age acceleration in cancer tissue
PhenoAge (2018)Composite clinical phenotypic ageAll-cause mortality, cancers, healthspan, physical functioning
GrimAge (2019)Plasma protein surrogates plus smoking pack-yearsTime-to-death, time-to-coronary-heart-disease, time-to-cancer
DunedinPACE (2022)Rate of decline across 19 organ-system indicatorsPace of aging; high test-retest reliability by design
What the major epigenetic aging measures were trained on and what they predict Horvath 2013; Levine 2018; Lu 2019; Belsky 2022

The number that should change how you read your result

In 2022 a team examined the technical reliability of the clocks themselves — not whether they predict mortality, but whether they give the same answer twice on the same sample. Technical noise alone produced deviations of up to 9 years between replicates across six prominent epigenetic clocks, which the authors described as limiting their utility.[5]

9 years

Maximum deviation between replicates of the same sample from technical noise alone

Higgins-Chen 2022, Nature Aging

1.5 years

Agreement between most replicates after the principal-component fix

Higgins-Chen 2022, Nature Aging

353

CpG sites in the original Horvath multi-tissue clock

Horvath 2013, Genome Biology

Sit with what that implies for a consumer product. If you test, spend six months on an intervention, and test again, a three-year improvement is entirely consistent with having changed nothing at all. The same paper offers the remedy — computing principal components from CpG-level data before predicting biological age brings most replicates within 1.5 years and improves detection of intervention effects — but a retail report rarely states which implementation produced your number.[5] DunedinPACE is a partial exception by construction, since it was trained on a methylation dataset restricted to exclude probes with low test-retest reliability, and reported high test-retest reliability as a result.[4]

How to read a test you have already taken

Three questions make a result interpretable. First, which clock produced it — a chronological-age clock and a mortality-trained clock answer different questions, and only the second is about health. Second, is it an age or a pace: DunedinPACE-style output is a rate, so a value near 1.0 means aging at roughly one year per year, and it is not comparable to a number of years. Third, was a reliability-corrected implementation used, because that determines whether a small change between two tests means anything.

And a fourth, practical point: nothing about a biological-age result tells you which intervention to take. The compounds most often sold alongside these tests have their own, much thinner evidence bases — see NAD⁺ precursors NR and NMN, rapamycin and the PEARL trial, metformin for longevity and taurine, or compare the whole field on our evidence matrix. The intervention with the least controversial evidence behind it remains the one that also treats age-related muscle loss.

For the trials that actually attempted to slow aging in humans and in animals rather than measure it, the reference points are the CALERIE caloric-restriction trial and the NIA Interventions Testing Program.

The honest bottom line

Epigenetic clocks are a genuine scientific achievement, and the second-generation ones predict mortality and disease well enough to be taken seriously as research tools. As a personal dashboard they are far weaker than they look: six prominent clocks disagreed with themselves by as much as nine years on replicate samples, which is larger than almost any effect an intervention could plausibly produce in a year. Test if you are curious. Do not let a change between two readings decide anything.

Reviewed against primary sources by the Aminoscope desk

Frequently asked

Are biological age tests accurate?
They are accurate at predicting outcomes across populations and unreliable at tracking one person over time. A 2022 analysis found that technical noise alone produced deviations of up to 9 years between replicates of the same sample across six prominent epigenetic clocks. Principal-component versions of those clocks bring most replicates within 1.5 years, but consumer reports rarely state which implementation was used.
What is the difference between GrimAge, PhenoAge and DunedinPACE?
PhenoAge was trained on composite clinical measures of phenotypic age and outperforms first-generation clocks for mortality, cancers and healthspan. GrimAge combines DNA methylation surrogates for seven plasma proteins with a methylation-based smoking estimate, and stands out for predicting time-to-death, coronary heart disease and cancer. DunedinPACE measures the rate of aging rather than an age, modeled from 19 organ-system indicators tracked over two decades.
Can a biological age test show whether a supplement is working?
Not reliably, on the standard implementations. If replicate noise alone can move a result by several years, a modest improvement between two tests is indistinguishable from measurement error. The authors who documented the problem also published a principal-component fix that improves detection of intervention effects, which is what a study would use — but it is not the default in consumer testing.
What is an epigenetic clock?
A statistical model that estimates age from DNA methylation levels at specific CpG sites. Horvath's 2013 multi-tissue clock, built from 8,000 samples across 51 healthy tissues and cell types and resting on 353 CpG sites, established that this is possible and that the resulting measure is biologically meaningful — it reads near zero in stem cells and shows acceleration in cancer tissue.
Does a good DunedinPACE score mean I am aging slowly?
DunedinPACE reports a rate rather than an age, so a value near 1.0 corresponds to aging at roughly one year per year. It was associated with morbidity, disability and mortality with effect sizes similar to GrimAge, and it was deliberately built from probes with acceptable test-retest reliability, which makes it more stable than several alternatives. It still describes a statistical association, not a personal prognosis.

Sources

  1. [1] Horvath S. (2013). DNA methylation age of human tissues and cell types. Genome Biol. PMID 24138928
  2. [2] Levine ME, Lu AT, Quach A, et al. (2018). An epigenetic biomarker of aging for lifespan and healthspan. Aging (Albany NY). PMID 29676998
  3. [3] Lu AT, Quach A, Wilson JG, et al. (2019). DNA methylation GrimAge strongly predicts lifespan and healthspan. Aging (Albany NY). PMID 30669119
  4. [4] Belsky DW, Caspi A, Corcoran DL, et al. (2022). DunedinPACE, a DNA methylation biomarker of the pace of aging. eLife. PMID 35029144
  5. [5] Higgins-Chen AT, Thrush KL, Wang Y, et al. (2022). A computational solution for bolstering reliability of epigenetic clocks: Implications for clinical trials and longitudinal tracking. Nat Aging. PMID 36277076

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